Showing posts with label Analysis. Show all posts
Showing posts with label Analysis. Show all posts

Tuesday, 20 August 2013

Glioblastoma response to anti-angiogenesis therapy revealed by new MR analysis technique

Main Category: Cancer / Oncology
Also Included In: MRI / PET / Ultrasound;  Neurology / Neuroscience
Article Date: 20 Aug 2013 - 1:00 PDT Current ratings for:
Glioblastoma response to anti-angiogenesis therapy revealed by new MR analysis technique
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A new way of analyzing data acquired in MR imaging appears to be able to identify whether or not tumors are responding to anti-angiogenesis therapy, information that can help physicians determine the most appropriate treatments and discontinue ones that are ineffective. In their report receiving online publication in Nature Medicine, investigators from the Martinos Center for Biomedical Imaging at Massachusetts General Hospital (MGH), describe how their technique, called vessel architectural imaging (VAI), was able to identify changes in brain tumor blood vessels within days of the initiation of anti-angiogenesis therapy.

"Until now the only ways of obtaining similar data on the blood vessels in patients' tumors were either taking a biopsy, which is a surgical procedure that can harm the patients and often cannot be repeated, or PET scanning, which provides limited information and exposes patients to a dose of radiation," says Kyrre Emblem, PhD, of the Martinos Center, lead and corresponding author of the report. "VAI can acquire all of this information in a single MR exam that takes less than two minutes and can be safely repeated many times."

Previous studies in animals and in human patients have shown that the ability of anti-angiogenesis drugs to improve survival in cancer therapy stems from their ability to "normalize" the abnormal, leaky blood vessels that usually develop in a tumor, improving the perfusion of blood throughout a tumor and the effectiveness of chemotherapy and radiation. In the deadly brain tumor glioblastoma, MGH investigators found that anti-angiogenesis treatment alone significantly extends the survival of some patients by reducing edema, the swelling of brain tissue. In the current report, the MGH team uses VAI to investigate how these drugs produce their effects and which patients benefit.

Advanced MR techniques developed in recent years can determine factors like the size, radius and capacity of blood vessels. VAI combines information from two types of advanced MR images and analyzes them in a way that distinguishes among small arteries, veins and capillaries; determines the radius of these vessels and shows how much oxygen is being delivered to tissues. The MGH team used VAI to analyze MR data acquired in a phase 2 clinical trial - led by Tracy Batchelor, MD, director of Pappas Center for Neuro-Oncology at MGH and a co-author of the current paper - of the anti-angiogenesis drug cediranib in patients with recurrent glioblastoma. The images had been taken before treatment started and then 1, 28, 56, and 112 days after it was initiated.

In some patients, VAI identified changes reflecting vascular normalization within the tumors - particularly changes in the shape of blood vessels - after 28 days of cediranib therapy and sometimes as early as the next day. Of the 30 patients whose data was analyzed, VAI indicated that 10 were true responders to cediranib, whereas 12 who had a worsening of disease were characterized as non-responders. Data from the remaining 8 patients suggested stabilization of their tumors. Responding patients ended up surviving six months longer than non-responders, a significant difference for patients with an expected survival of less than two years, Emblem notes. He adds that quickly identifying those whose tumors don't respond would allow discontinuation of the ineffective therapy and exploration of other options.

Gregory Sorensen, MD, senior author of the Nature Medicine report, explains, "One of the biggest problems in cancer today is that we do not know who will benefit from a particular drug. Since only about half the patients who receive a typical anti-cancer drug benefit and the others just suffer side effects, knowing whether or not a patient's tumor is responding to a drug can bring us one step closer to truly personalized medicine - tailoring therapies to the patients who will benefit and not wasting time and resources on treatments that will be ineffective." Formerly with the Martinos Center, Sorensen is now with Siemens Healthcare.

Study co-author Rakesh Jain, PhD, director of the Steele Laboratory in the MGH Department of Radiation Oncology, adds, "This is the most compelling evidence yet of vascular normalization with anti-angiogenic therapy in cancer patients and how this concept can be used to select patients likely to benefit from these therapies."

Lead author Emblem notes that VAI may help further improve understanding of how abnormal tumor blood vessels change during anti-angiogenesis treatment and could be useful in the treatment of other types of cancer and in vascular conditions like stroke. He and his colleagues are also exploring whether VAI can identify which glioblastoma patients are likely to respond to anti-angiogenesis drugs even before therapy is initiated, potentially eliminating treatment destined to be ineffective. A postdoctoral research fellow at the Martinos Center at the time of the study, Emblem is now a principal investigator at Oslo University Hospital in Norway and maintains an affiliation with the Martinos Center.

Article adapted by Medical News Today from original press release. Click 'references' tab above for source.
Visit our cancer / oncology section for the latest news on this subject.

Additional co-authors of the Nature Medicine paper are Kim Mouridsen, PhD, Christian Farrar, PhD, Dominique Jennings, Ronald Borra, PhD, and Bruce Rosen, MD, PhD, Martinos Center at MGH; Rakesh Jain, PhD, Steele Laboratory of Tumor Biology, MGH Radiation Oncology; Atle Bjornerud, PhD, University of Oslo, Norway; Patrick Wen, MD, Dana-Farber Cancer Institute; and Percy Ivy, MD, National Cancer Institute. Support for the study includes numerous grants from the U.S. Public Health Service, the National Cancer Institute and other funders.

Vessel architectural imaging identifies cancer patient responders to anti-angiogenic therapy

Kyrre E Emblem, Kim Mouridsen, Atle Bjornerud, Christian T Farrar, Dominique Jennings, Ronald J H Borra, Patrick Y Wen, Percy Ivy, Tracy T Batchelor, Bruce R Rosen, Rakesh K Jain & A Gregory Sorensen; Nature Medicine (2013) doi:10.1038/nm.3289

Massachusetts General Hospital

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'Glioblastoma response to anti-angiogenesis therapy revealed by new MR analysis technique'

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Monday, 29 July 2013

Functional role in the cerebellum suggested by analysis of 26 networked autism genes

Main Category: Autism
Article Date: 29 Jul 2013 - 0:00 PDT Current ratings for:
Functional role in the cerebellum suggested by analysis of 26 networked autism genes
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A team of scientists has obtained intriguing insights into two groups of autism candidate genes in the mammalian brain that new evidence suggests are functionally and spatially related. The newly published analysis identifies two networked groupings from 26 genes associated with autism that are overexpressed in the cerebellar cortex, in areas dominated by neurons called granule cells.

The team, composed of neuroscientists and computational biologists, worked from a database providing expression levels of individual genes throughout the mouse brain, as complied in the open-source Allen Mouse Brain Atlas. To promote reproducibility, the scientists surveyed expression data of over 3000 genes, about three-fourths of all the genes listed in the Atlas for which two independent sets of data have been complied.

The work was led by Professor Partha Mitra of Cold Spring Harbor Laboratory (CSHL) and scientists from MindSpec, a nonprofit research organization, founded by Dr. Sharmila Banerjee-Basu.

Despite obvious genetic and neuroanatomical differences between mouse and human, the team explains, mouse models are extremely effective in dissecting out the role of specific genes, pathways, neuronal subtypes and brain regions in specific abnormal behaviors manifested in both mice and people.

Based on years of studies in both species, scientists now know of mutations affecting more than 300 genes whose occurrence correlates with autism susceptibility; more are certain to be identified. Some of these candidate genes are more strongly correlated with the illness than others, although correlation is not the same thing as direct evidence of causation.

Nevertheless, "the key question as yet unanswered," notes Dr. Mitra, "concerns the way or ways in which particular mutations, singly or in combination, cause pathologies that result in the complex combination of symptoms that characterizes autism in children." It is assumed that autism pathologies are the result of insults - genetic, environmental, or most likely both - sustained at the time of conception and early in development.

Dr. Idan Menashe, now of Ben-Gurion University of the Negev in Israel, and Dr. Pascal Grange, a postdoctoral researcher in the Mitra lab, demonstrated that co-expression of 26 autism genes was "significantly higher" than would occur by chance. "This suggests that these 26 genes have common neuro-functional properties," says Dr. Menashe.

The team found two co-expressed networks or "cliques" of genes that are significantly enriched with autism genes. They then asked where in the mouse brain these cliques are expressed. Notably, genes in both groups showed significant overexpression in the cerebellar cortex, and particularly in regions in which granule cells predominate. "This result supports prior studies pointing to involvement of the cerebellum in autism," says Dr. Grange. Specifically, a recent neuroimaging study highlighted functional subregions in the cerebellum as playing a role in both motor and cognitive tasks. Other genes associated with autism have been shown in other studies to play a role in the development of this brain region.

"Our study provides insights into co-expression properties of genes associated with autism and suggests specific brain regions implicated in pathology. Complementing these findings with additional genomic and neuroimaging analyses from both mouse and human brains will help in obtaining a broader picture of the autistic brain," the team concludes.

Article adapted by Medical News Today from original press release. Click 'references' tab above for source.
Visit our autism section for the latest news on this subject.

The research described in this release was made possible by grants from: NIH-NIDA (R21DA027644-01).

"Co-expression profiling of autism genes in the mouse brain" appears online head of print in PLOS Computational Biology. The authors are: Idan Menashe, Pascal Grange, Eric C. Larsen, Sharmila Banerjee-Basu and Partha P. Mitra. 10.1371/journal.pcbi.1003128

Cold Spring Harbor Laboratory

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Cold Spring Harbor Laboratory. "Functional role in the cerebellum suggested by analysis of 26 networked autism genes." Medical News Today. MediLexicon, Intl., 29 Jul. 2013. Web.
29 Jul. 2013. APA

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'Functional role in the cerebellum suggested by analysis of 26 networked autism genes'

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If you write about specific medications or operations, please do not name health care professionals by name.

All opinions are moderated before being included (to stop spam). We reserve the right to amend opinions where we deem necessary.

Contact Our News Editors

For any corrections of factual information, or to contact the editors please use our feedback form.

Please send any medical news or health news press releases to:

Note: Any medical information published on this website is not intended as a substitute for informed medical advice and you should not take any action before consulting with a health care professional. For more information, please read our terms and conditions.



View the original article here

Wednesday, 24 July 2013

Health Tips & Info : Analysis And Synthesis In Cancer Research.

Consider a medical phenomenon, cancer. Which of the following do you think true?A. Cancer is essentially a genetic disease.B. Cancer is a disorder of unregulated proliferation of abnormal cells.C. Smoking accounts for roughly 30 percent of all cancer deaths in the United States, overweight and obesity  account for 15-20 percent.D. Inherited genetic dispositions contribute significantly to 5-10 percent of breast cancer and 5-13 percent of colon cancer incidences.E. In the industrialized nations, roughly 7 percent of cancer deaths are attributable to viral infections; 4 percent to occupational hazards; 2 percent to sunlight; 2 percent to pollutions of air, water, and soil; and less than 1 percent to food additives and industrial products.It is F, according to available scientific data, although some people reject any answer that does not conform to their pet ideology. Statements A to E describe cancer from the perspectives of different organizational levels: molecular, cellular, personal, familial, and environmental. A major achievement in cancer research is the introduction of a framework that accommodates phenomena in these levels and roughly explains their interrelationships. Its center of gravity lies on the molecular and cellular levels. Nevertheless, its explanations of how certain viruses, chemicals, and radiations contribute to cancer suggest links to environmental and social researches on people’s exposure to these carcinogens.Cancer research underscores the systematic approach that makes natural science and modern engineering so powerful. Faced with a complex phenomenon, scientists analyze or reduce it to components and simpler factors that can be investigated thoroughly, for instance analyzing cancer development into cellular dynamics and gene mutations. The fruitfulness of the reductive approach is apparent when one compares the abundant solid knowledge it yields to the empty rhetoric of mystical holism that insists all is a seamless web impervious to analysis.To analyze, however, is not to analyze away. Reducing cancer to genes is not subscribing to a dogmatic reductionism that regards a patient as nothing but a bag of genes. Despite the success and glamour of genetics and molecular biology in disease research, few if any researcher would disagree with the editors of a recent segment on complex diseases in Science: “It’s not just the genes.”Holism that reviles analysis and reductionism that reviles synthesis are both detrimental to science, in which analysis and synthesis are complementary. For scientific research, reduction of a phenomenon into elements is incomplete if not followed by integration of relevant elements for the goal of explaining the original phenomenon. Socrates recommended the methods of division and collection. Galileo’s methods were described as resolution and composition. Newton explained the effects of analysis and synthesis in scientific investigations. Descartes followed a similar vein and went further to combine analysis and synthesis as two steps of a single method.Perhaps the most comprehensive articulation comes from engineers. In designing complex systems such airplanes, engineers must ensure the functions of the airplane as an integral whole and specify minute details of its ten thousand parts that must work together. To rationalize design processes, they have developed systems engineering, in which analysis and synthesis are graphically depicted as the letter “V.” The downward stroke of the V represents the decomposition of a system into smaller and smaller parts and the upward stroke the assemblage of the parts into the system as a whole.The systems-engineering V model can be extrapolated to science. Twentieth century biology mainly follows the downward stroke as it anatomizes organisms into organs and cells and molecules. Now that molecular biology has completely cataloged the genes for human and many other species, biology is turning the corner of the V. Centers of systems biology, which begin to appear in Harvard and other places, turn to study how molecular dynamics contributes to life phenomena on higher levels.From : Sunny Y. Auyang Journal

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