Showing posts with label Scientists. Show all posts
Showing posts with label Scientists. Show all posts

Monday, 19 August 2013

Scientists find and assess prostate tumors with the help of sugar

Main Category: Prostate / Prostate Cancer
Article Date: 19 Aug 2013 - 1:00 PDT Current ratings for:
Scientists find and assess prostate tumors with the help of sugar
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A natural form of sugar could offer a new, noninvasive way to precisely image tumors and potentially see whether cancer medication is effective, by means of a new imaging technology developed at UC San Francisco in collaboration with GE Healthcare.

The technology uses a compound called pyruvate, which is created when glucose breaks down in the body and which normally supplies energy to cells. In cancer, however, pyruvate is more frequently converted to a different compound, known as lactate. Previous animal studies showed that scientists could track the levels of pyruvate as it is converted to lactate via magnetic resonance imaging (MRI), by using a technology called hyperpolarization and injecting the hyperpolarized pyruvate into the body. The amount of lactate produced and rate of conversion enabled researchers to precisely detect the limits of a mouse's tumor, identify which cancers were most aggressive and track early biochemical changes as tumors responded to medication, long before physical changes occurred.

Now, a 31-patient study performed by scientists at UCSF and their collaborators at GE Healthcare has shown that the technology is safe in humans and effectively detects tumors in patients with prostate cancer. Findings appeared online in Science Translational Medicine.

While this first-in-human study was designed to identify a safe dosage and verify effectiveness, it lays the groundwork for using the technology to diagnose a variety of cancers and track treatment non-invasively, without conducting repeated biopsies.

"We now have a safe dose for patients - that was our primary goal," said Sarah J. Nelson, PhD, a UCSF professor of radiology and director of the Surbeck Laboratory of Advanced Imaging at UCSF, who was lead author on the study and led a diverse team on this project.

"In animal models, the amount of lactate over pyruvate is directly related to the aggressiveness of the cancer. We also have a lot of data that show it's reduced in cancers after treatment," she said. "This is a very ubiquitous molecule that will be important in tailoring treatments to specific individuals."

Prostate cancer is the most common form of cancer, with more than 200,000 new cases reported each year in the United States, according to the Centers for Disease Control and Prevention. The increased use of prostate-specific antigen (PSA) levels for screening men has been widely recognized as having identified more patients with prostate cancer at an earlier, and potentially more treatable, stage. Many of those tumors are slow growing, but it is difficult to predict which those are.

For an oncologist, this real-time imaging could provide immediate feedback on whether a patient should continue active surveillance of the tumor or pursue treatment, and also whether a therapy is working, either during standard treatment or in a clinical trial.

"There are natural risks in any treatment for prostate cancer, including radiation therapy and surgery. Those risks can have an enormous impact on the patient's quality of life," said UCSF oncologist Eric Small, MD, a co-author on the paper, UCSF professor of medicine and urology, and deputy director of the UCSF Helen Diller Family Comprehensive Cancer Center. "This technology begins to give us the ability to more accurately assess the extent and risk of an individual patient's actual cancer, which is absolutely critical, but so far is largely an unmet medical need."

The technology developed out of a collaboration that began nearly eight years ago, when GE Healthcare approached UCSF to see whether it could translate technology it had developed with researchers in Sweden into a clinical application. The hyperpolarizing technology had been shown to detect animal tumors, but converting that for clinical use was a formidable challenge.

UCSF pulled together a team of researchers ranging from oncologists and radiologists to clinical pharmacists with the precise knowledge of building clean-rooms for pharmaceutical production. At the time, Nelson also was the scientific director of the UCSF arm of the California Institute for Quantitative Biosciences (QB3), which supports both basic and translational science at the crossroads of biology and the quantitative sciences, such as imaging and bioinformatics.

"UCSF and QB3 offered an unusual combination of talent all in one location. They brought together the best engineering from UC Berkeley and the best bioscience and pharmacy knowledge from UCSF, and are now demonstrating the technology in a world-renowned academic medical center," said Jonathan Murray, managing director of Research Circle Technology at GE Healthcare and a co-author on the paper. "At GE Healthcare, we are delighted with the speed of progress of this collaboration. The science is very exciting."

In the clinical research study, which started in December 2010, the researchers labeled pyruvate with carbon-13 and injected this "hyperpolarized pyruvate" imaging agent into 31 prostate cancer patients in the UCSF Medical Center and UCSF Helen Diller Family Comprehensive Cancer Center. The team then used an MRI to follow pyruvate and its conversion to lactate in the prostate. As in previous studies in mice, the higher, more intense signals indicated a more rapid conversion to lactate, possibly a sign of more aggressive cancer. In contrast, there was very limited conversion detected in normal prostate.

The study deliberately focused on patients with low-grade tumors who had not yet received treatment, to identify the safe and appropriate dosage of pyruvate needed. Future studies will use the technology to assess the effectiveness of a patient's cancer therapy in shrinking their tumor - knowledge that will enable physicians to assess the dosage of chemotherapy needed on an individual basis.

While potential commercial use is still five to 10 years away, the UCSF team has received grants to extend the technology for studies in patients with cancers of the brain, breast, liver, lymph glands, pancreas and prostate. GE Healthcare also has developed equipment to process the hyperpolarized pyruvate in a less technical environment, enabling a broader clinical trial in the future.

Article adapted by Medical News Today from original press release. Click 'references' tab above for source.
Visit our prostate / prostate cancer section for the latest news on this subject.

The project was funded through the National Institute of Biomedical Imaging and Bioengineering (NIH grants R01 EB007588 and R21 EB005363). The polarizer and costs of the 13C patient studies were supported with funding from GE Healthcare. Some of the MRI acquisition methods have been patented; the authors declare no other competing interests.

Metabolic Imaging of Patients with Prostate Cancer Using Hyperpolarized [1-13C]Pyruvate, Sci. Transl. Med. DOI: 10.1126/scitranslmed.3006070. Additional UCSF co-authors on the project include John Kurhanewicz, Daniel B. Vigneron, Peder E. Z. Larson, Andrea L. Harzstark, Marcus Ferrone, Mark van Criekinge, Jose W. Chang, Robert Bok, Ilwoo Park, Galen Reed, Lucas Carvajal, Pamela Munster, and Vivian K. Weinberg. Additional co-authors include Jan Henrik Ardenkjaer-Larsen, Albert P. Chen, Ralph E. Hurd, Liv-Ingrid Odegardstuen, James Tropp and Jonathan A. Murray from General Electric Healthcare, Waukesha, WI; and Fraser J. Robb, from USA Instruments, Inc., Aurora, OH.

Full results and author contributions can be found in the paper, Metabolic imaging of patients with prostate cancer using hyperpolarized [1-13C] pyruvate. Sci. Transl. Med. 5, 198ra108 (2013).

These concepts are still investigational and not being offered for sale, nor have they been cleared or approved by the FDA for commercial availability.

University of California - San Francisco

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Friday, 16 August 2013

DNA scientists map origins of cancer

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Academic Journal
Main Category: Cancer / Oncology
Also Included In: Genetics
Article Date: 15 Aug 2013 - 3:00 PDT Current ratings for:
DNA scientists map origins of cancer
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Scientists have produced a comprehensive catalogue of DNA signatures of mutations that cause the most common cancers in humans, and identified some of the biological processes involved.

They believe their findings will greatly increase understanding of cancer and make a major contribution to preventing and treating the disease.

Cancer happens when mutations in the DNA of cells disrupt normal growth and functioning causing them to form tumors. And while many triggers of genetic mutation are understood - chemicals in tobacco smoke, for example, can cause lung cancer, and ultraviolet radiation can lead to skin cancer - scientists do not know much about the biology of how such exposure actually produces the genetic damage.

Now a large international group of researchers has studied nearly 5 million mutations in over 7,000 cancers and traced 20 DNA-damaging processes that explain nearly all the mutations in 30 of the most common cancers.

In many cases they also pinpointed the underlying biological process responsible.

This work represents the first comprehensive catalogue of genetic mutational processes behind tumor development.

For each mutation, the catalogue shows the genetic trademark or signature it imprints in a cell's DNA.

First author Ludmil Alexandrov, of the Wellcome Trust Sanger Institute in the UK, and colleagues, report their findings in an August 14th online issue of Nature.

The researchers discovered some interesting features of the cancer-driving mutations:

All of the cancers they studied had two or more DNA signatures, showing that processes link up to cause the mutations.Different cancers are driven by different numbers of mutational processes: ovarian cancer is the result of two, while liver cancer is the result of six.Some of the signatures feature in more than one type of cancer, while others only feature in one.Of the 30 most common types of cancer, 25 have signatures caused by mutation processes related to aging.A signature that results from flaws in DNA-repairing tools caused by mutations in BRCA1, a gene already known to be involved in breast cancer, was found not only in breast cancer but also in ovarian and pancreatic cancers.

The team also found that enzymes called APOBECs which are already known to mutate DNA, were involved in over half the cancer types.

APOBEC enzymes are normally active during viral infections, where they attack viruses by damaging their DNA. Now it seems they also cause collateral damage to host cell DNA.

The researchers had only recently discovered that breast cancer shows a surprising mutation pattern where small regions of the genome are swamped with mutations, a process called kataegis.

In this latest study they found kataegis features in most cancers, and suggest its trigger may involve APOBEC enzymes.

Alexandrov told the press:

"We have identified the majority of the mutational signatures that explain the genetic development and history of cancers in patients.

We are now beginning to understand the complicated biological processes that occur over time and leave these residual mutational signatures on cancer genomes."

In a study published earlier this year, US researchers found that some cancer mutations stop tumor growth.

Written by Catharine Paddock PhD
Copyright: Medical News Today
Not to be reproduced without permission of Medical News Today Visit our cancer / oncology section for the latest news on this subject.

"Signatures of mutational processes in human cancer"; Ludmil B. Alexandrov, Serena Nik- Zainal, David C. Wedge, Samuel A. J. R. Aparicio, Sam Behjati, and others; Nature published online 14 August 2013; DOI: 10.1038/nature12477; Link to Article.

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Thursday, 15 August 2013

Scientists unravel cancers linked to herbal remedies containing Aristolochic Acid, a natural compound found in Aristolochia plants

Main Category: Cancer / Oncology
Also Included In: Complementary Medicine / Alternative Medicine;  Liver Disease / Hepatitis
Article Date: 14 Aug 2013 - 0:00 PDT Current ratings for:
Scientists unravel cancers linked to herbal remedies containing Aristolochic Acid, a natural compound found in Aristolochia plants
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A team of scientists from the National Cancer Centre Singapore, Duke-NUS Graduate Medical School Singapore, and Taiwan's Chang Gung Memorial Hospital, LinKou, have made a breakthrough in understanding the cancer-promoting action of Aristolochic Acid (AA), a natural product of Aristolochia plants traditionally used in some Asian herbal remedies for weight loss and slimming. Using advanced DNA sequencing technologies, the team, led by Professors Teh Bin Tean, See-Tong Pang, Patrick Tan and Steve Rozen discovered that AA is the most potent carcinogen identified to date, causing more DNA mutations than cigarette smoke or ultraviolent light. The team also discovered that besides its previously known contribution to kidney failure and a form of kidney cancer, AA may also contribute to liver cancer. The team identified a "genetic fingerprint" of AA exposure that may pave the way to new approaches to detect AA presence in humans and the environment. The group is also affiliated with the Cancer Science Institute in Singapore, and the Genome Institute of Singapore.

AA is a natural compound found in Aristolochia plants commonly used in traditional herbal preparations for various health problems such as weight-loss, menstrual symptoms and rheumatism. It was officially banned in Europe and North America since 2001 and in Asia since 2003. However, its long-term impact is still being felt as patients with associated kidney failure and cancer are still being diagnosed, especially in Taiwan. In addition, certain AA-containing products are still permitted under supervision and products containing AA are still easily available worldwide, including over the internet.

The potent cancer-promoting activity of AA strongly warrants efforts to restrict the use of AA containing products, including health supplements. "We would like to call for greater public awareness on the adverse health effects of AA. It is therefore important to know the contents of herbal products before one consumes them." said Prof Pang. Reassuringly, in Singapore there is no cause for worry as under the Poisons Act since 1 January 2004, products and herbs sold and supplied in Singapore are not allowed to contain AA and the toxic constituents of Aristolochia herbs.

The Singapore-Taiwan study also reports that carcinogens can leave tell-tale "genetic fingerprints" of their exposure in the DNA of cancer cells, and provides a valuable demonstration of how such fingerprints can be used to identify other cancers not previously associated with that carcinogen. Dr Poon Song Ling, the lead author of the study, said: "AA's contributions to kidney failure and cancer have been documented, but AA's possible role in other cancer types was unknown. In this study, we found that the AA-related DNA fingerprint could be used to screen for the potential involvement of AA in other cancers, such as liver cancer." Such findings could lead to a new wave of DNA-based detection systems for monitoring carcinogen exposures in humans and the environment.

This breakthrough came after 1.5 years of intensive research and was recently published online in Science Translational Medicine, a publication that focuses on practical medical advances that result from all stages of translational medicine.

Article adapted by Medical News Today from original press release. Click 'references' tab above for source.
Visit our cancer / oncology section for the latest news on this subject.

The research was supported by grants from the Singapore National Medical Research Council, the Singapore Millennium Foundation, the Lee Foundation, the National Cancer Centre Research Fund, The Verdant Foundation, the Duke-NUS Graduate Medical School Singapore, the Cancer Science Institute of Singapore, the Chang Gung Memorial Hospital, LinKou, the Taiwan National Science Council, and the Wellcome Trust.

Mutational Signature of Aristolochic Acid Exposure as Revealed by Whole-Exome Sequencing

Margaret L. Hoang, Chung-Hsin Chen, Viktoriya S. Sidorenko, Jian He, Kathleen G. Dickman, Byeong Hwa Yun, Masaaki Moriya, Noushin Niknafs, Christopher Douville, Rachel Karchin, Robert J. Turesky, Yeong-Shiau Pu, Bert Vogelstein, Nickolas Papadopoulos, Arthur P. Grollman, Kenneth W. Kinzler, and Thomas A. Rosenquist. Sci Transl Med 7 August 2013 5:197ra102. DOI:10.1126/scitranslmed.3006200

SingHealth

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Monday, 5 August 2013

Scientists decode mechanisms of cell orientation in the brain

Main Category: Neurology / Neuroscience
Also Included In: Biology / Biochemistry
Article Date: 02 Aug 2013 - 1:00 PDT Current ratings for:
Scientists decode mechanisms of cell orientation in the brain
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When the central nervous system is injured, oligodendrocyte precursor cells (OPC) migrate to the lesion and synthesize new myelin sheaths on demyelinated axons. Scientists at the Institute of Molecular Cell Biology at Johannes Gutenberg University Mainz (JGU) have now discovered that a distinct protein regulates the direction and movement of OPC toward the wound. The transmembrane protein NG2, which is expressed at the surface of OPCs and down-regulated as they mature to myelinating oligodendrocytes, plays an important role in the reaction of OPC to wounding. The results of this study have recently been published in the renowned Journal of Neuroscience.

The myelin sheath functions to electrically isolate axons of many nerve fibers and is synthesized by oligodendrocytes which mature from the OPC. In the case of injury, neural cells send out signaling molecules which attract the OPC. The NG2 protein helps OPCs to react to some of these and move in a directed and orientated fashion. "We were able to prove in cell biological experiments that NG2 orientates OPC toward the lesion and ensures targeted OPC migration toward the wound through the regulation of cell polarity", explained Dr. Fabien Binamé, lead author of the study. Supported by funding of the German Research Foundation (DFG), Dr. Fabien Binamé is currently carrying out his research at the Institute of Molecular Cell Biology headed by Professor Jacqueline Trotter.

"The function and mode of operation of NG2 is not yet fully understood", added co-author Dominik Sakry, who was also involved in the study. "But it looks as if the NG2-associated regulatory mechanism becomes apparent only in cases of injury of the nervous system."

Diseases such as Multiple Sclerosis or brain tumors go hand in hand with damage of nerve tissue. "The results of our study on NG2-mediated basic mechanisms of cell orientation and migration could aid in understanding the repair of damaged demyelinated tissue, or be important for treatment of highly active migratory brain tumors which often express high levels of NG2", said Professor Jacqueline Trotter, head of the JGU Institute of Molecular Cell Biology.

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Scientists discover new type of protein modification, may play role in cancer and diabetes

Main Category: Cancer / Oncology
Also Included In: Diabetes;  Biology / Biochemistry
Article Date: 05 Aug 2013 - 0:00 PDT Current ratings for:
Scientists discover new type of protein modification, may play role in cancer and diabetes
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Scientists at The Scripps Research Institute (TSRI) have discovered a new type of chemical modification that affects numerous proteins within mammalian cells. The modification appears to work as a regulator of important cellular processes including the metabolism of glucose. Further study of this modification could provide insights into the causes of diabetes, cancer and other disorders.

"It appears to be an intrinsic feedback mechanism in glucose metabolism, but I suspect that its other functions throughout the cell will prove at least as interesting when they are more fully elucidated," said Benjamin F. Cravatt, chair of the Department of Chemical Physiology and member of the Skaggs Institute for Chemical Physiology at TSRI.

Cravatt and his postdoctoral fellow Raymond E. Moellering reported the finding in the August 2, 2013 issue of the journal Science.

The Cravatt laboratory has long studied the natural chemical modifications that can change the functions of proteins "on the fly," switching their biological activities on or off or otherwise altering them. The better known of these modifications include phosphorylation, the addition of a small molecule known as a phosphate group, and acetylation, the addition of an acetyl group.

In search of new protein modifiers, Cravatt and Moellering, whose postdoctoral fellowship is sponsored in part by the Howard Hughes Medical Institute and the Damon Runyon Cancer Research Foundation, decided to investigate a small molecule known as 1,3-bisphosphoglycerate (1,3-BPG). The molecule's chemical makeup suggested that it might readily react with some proteins to form semipermanent, function-altering modifications. 1,3-BPG is one of the main "intermediate" molecules produced during glycolysis, which is a core metabolic pathway that converts glucose to cellular fuel.

"1,3-BPG's intrinsic reactivity seemed odd to us, considering that it is such a central metabolite," remembered Moellering.

Moellering's initial test-tube experiments showed that 1,3-BPG does indeed react with certain lysine amino acids to modify GAPDH, the enzyme that mediates the production of 1,3-BPG. "That gave us the first indication that this reaction does happen, and that we should therefore start looking for it in cells," he said.

After devising new methods to detect this unique lysine modification in human cell cultures, Moellering soon found it - on other glucose-metabolizing enzymes, as well as on proteins seemingly unrelated to glucose metabolism.

"With every step we took, the project became more interesting, because we were finding signs that this reaction occurs frequently in cells and in animal tissues, and in unexpected cellular locations, too," Moellering said.

He detected the signature of the new lysine modification not only on proteins in the main volume of the cell (the cytosol), but also in the DNA-containing cell nucleus and even on the cell's membrane compartments.

"It appears that wherever GAPDH goes within cells, it is capable of catalyzing the localized production of 1,3-BPG, which in turn reacts with nearby proteins to modify their structure and function," said Cravatt.

Moellering found that when 1,3-BPG's lysine modification occurs on glucose-metabolizing enzymes, it tends to inhibit their activities, causing a slowdown of central glucose processing and a consequent buildup of certain glucose metabolites in the processing pathway. Moellering and Cravatt suspect that these overabundant metabolites may end up being shunted into other cellular processes besides basic fuel-making - processes that contribute to the synthesis of new molecules and even cell proliferation.

Moellering also discovered that 1,3-BPG and the modification it makes on proteins become more prevalent as glucose levels rise. Within the context of glucose metabolism, 1,3-BPG's modification thus seems to act as a "very old, maybe ancient feedback mechanism for regulating that central metabolic pathway," Moellering said.

The abnormal processing of glucose within cells features in a number of major diseases including cancer and diabetes. "Cancer cells, for example, bring in as much as 20 times more glucose than non-cancerous cells of the same type," Moellering noted. He now wants to find out whether 1,3-BPG is part of the problem in such cells. At abnormally high levels, it conceivably could help force glucose metabolism toward the runaway cell proliferation that is a hallmark of cancer.

Cravatt and Moellering also want to learn more about what 1,3-BPG's lysine modification does in the nuclei and membrane compartments of cells, where they found evidence of it. "We suspect that it works to connect glucose metabolism to other pathways, perhaps as a kind of signaling mechanism," said Moellering.

Already Moellering has uncovered evidence that there are enzymes that work to reverse 1,3-BPG's modification of lysines - which underscores the likelihood that this modification represents a fundamental, dynamic mechanism in cells. "We'd like to discover which enzymes catalyze the removal of the modification," said Cravatt, "because then, in principle, we could use inhibitors of these enzymes to control the levels of the modification and get a better understanding of its biological functions as well as the conditions under which it occurs."

Funding for the study, "Functional Lysine Modification by an Intrinsically Reactive Primary Glycolytic Metabolite," was provided by the National Institutes of Health (CA087660), the Skaggs Institute for Chemical Biology at TSRI and the Damon Runyon Cancer Research Foundation.

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Scientists emphasize urgent need for improved disease surveillance and control in the Democratic Republic of Congo

Main Category: Tropical Diseases
Article Date: 01 Aug 2013 - 14:00 PDT Current ratings for:
Scientists emphasize urgent need for improved disease surveillance and control in the Democratic Republic of Congo
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Following the most deadly conflict since World War II, and nearly two decades of population displacement, the Democratic Republic of Congo (DR Congo) now may represent one of the world's highest burdens of neglected tropical diseases (NTDs). A lack of surveillance activities and epidemiologic data is a key factor in delaying progress in disease control and elimination programs, scientists report in an editorial publishing Thursday, August 1 in PLOS Neglected Tropical Diseases.

Based on the limited information available, the researchers found that DR Congo may have some of the highest levels of intestinal helminth infections, lymphatic filariasis and schistosomiasis on the African continent. DR Congo also bears the greatest number of cases of leprosy in Africa and human African trypanosomiasis (HAT) globally. A number of important human viral infections including HIV/AIDS, Chikungunya, Ebola and monkeypox may have also first emerged from DR Congo.

Despite the likelihood of widespread NTDs, there are only minimal reported surveillance activities in DR Congo, a nation that is nearly the size of Western Europe. To strengthen DR Congo's health infrastructure and ultimately its economic output, the authors propose a comprehensive NTD mapping, control and research program.

"Identifying the reach and severity of NTDs is an essential first step to providing targeted treatments to millions of people in DR Congo," said co-author Dr. Anne Rimoin, associate professor in the Department of Epidemiology at the UCLA School of Public Health. "Increasing surveillance activity of NTDs and studying the emergence of key viral infections should be one of the top health priorities for the country."

As the authors recognize, the Ministry of Public Health of DR Congo has demonstrated willingness to expand NTD disease surveillance and control activities in the years ahead. With the support of the United States Agency for International Development (USAID), DR Congo is planning an ambitious program of NTD mapping and integrated diseases control focused on mass drug administration, while the World Health Organization, its Regional Office for Africa (AFRO) and the Belgium Development Agency have offered additional support.

"We have a responsibility to better understand the true burden of NTDs in DR Congo," said Dr. Peter Hotez, founding dean of the National School of Tropical Medicine at Baylor College of Medicine and President of the Sabin Vaccine Institute. "Future findings from enhanced disease surveillance and research will help shape and achieve important global development milestones in a country that has missed out on much of the economic and social progress spreading throughout many other parts of Africa."

Article adapted by Medical News Today from original press release. Click 'references' tab above for source.
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Rimoin AW, Hotez PJ (2013) NTDs in the Heart of Darkness: The Democratic Republic of Congo’s Unknown Burden of Neglected Tropical Diseases, PLoS Negl Trop Dis 7(7): e2118. doi:10.1371/journal.pntd.0002118

PLOS Neglected Tropical Diseases is an open-access, peer-reviewed journal published weekly by the Public Library of Science (PLOS).

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Scientists solve structure of infection tool used by Yersinia bacterium

Main Category: Infectious Diseases / Bacteria / Viruses
Also Included In: Biology / Biochemistry
Article Date: 03 Aug 2013 - 0:00 PDT Current ratings for:
Scientists solve structure of infection tool used by Yersinia bacterium
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Abdominal pain, fever, diarrhoea - these symptoms could point to an infection with the bacterium Yersinia. The bacterium's pathogenic potential is based on a syringe-like injection apparatus called injectisome. For the first time, an international team of researchers including scientists at the Helmholtz Centre for Infection Research (HZI) in Braunschweig, Germany, has unraveled this molecular syringe's spatial conformation. The researchers were able to demonstrate that the length of Yersinia's injectisome's basal body, which crosses the bacterial cell wall, is adjustable - very likely an adaptation to physical stress.

The rod-shaped bacterium Yersinia enterocolitica, which is transmitted through contaminated food, causes gastrointestinal diseases. In Germany alone, several thousand cases are reported annually. Yersinia uses a rather sophisticated tool - its injection apparatus - to infect humans. Not only does the apparatus look like a syringe, it actually serves a similar purpose. A molecular "needle", which sticks out from the bacterium's surface, extends across the bacterial membranes to the host cell. It is through this needle that the bacterium "injects" substances that facilitate infection of the host. Now, for the first time, an interdisciplinary team of HZI scientists together with their colleagues at the Biozentrum of the University of Basel and at the Ecole Polytechnique Fédérale de Lausanne in Switzerland, has presented the structure of Yersinia enterocolitica's injectisome in high-resolution and 3D. They published their results in the digital scientific magazine eLife.

Their innovative approach has yielded surprising results. Previous studies had been concerned with isolating the molecular syringe from the bacterium and studying it under the electron microscope. "We, however, actually studied the injectisome in situ, in other words, on the bacterial surface, right where it normally occurs," explains Prof. Henning Stahlberg, University of Basel. To this end, the researchers cooled the bacteria to minus 193 degrees Celsius and used cryo-electron microscopy to take pictures of the syringe from various angles. They then computed a spatial structure from a set of two-dimensional images - a highly effective method for examining large molecular complexes. The syringe, which consists of some 30 different proteins, definitely falls into that category.

When comparing over 2000 single syringes from over 300 bacteria, the researchers made a surprising discovery: "There is a range of different lengths of each injection apparatus' base - in some cases, it's on the order of ten nanometers, or ten millionth of a millimeter. It can be stretched or compressed - just like a spring," explains Dr. Stefan Schmelz of the HZI, one of the study's first authors. As much as we consider such dimensions to be miniscule - to a bacterium, which itself is but a hundred times that size, they are substantial. "Bacteria are exposed to considerable forces, be it during contact with other cells or upon changes in environmental salinity," explains Prof. Dirk Heinz, the HZI's scientific director and former head of the HZI Department of Molecular Structural Biology. "If the injectisomes were rigidly constructed, bacteria would most likely be unable to resist these forces. Their cell walls would simply rupture."

Insights into the structure of Yersinia's attack tool offer clues as to ways in which the molecular syringe may be therapeutically inhibited. Without this apparatus, the bacteria are practically harmless. "Also other pathogenic bacteria make use of this principle during infection, for example Salmonella that cause food poisoning," confirms Dr. Mikhail Kudryashev, another of the study's primary authors and a researcher at the University of Basel. The team was already able to document this same flexibility in Shigella, the causative agent behind bacillary dysentery. The "molecular building kit," as Schmelz calls it, is highly similar, suggesting that insights from this current study can potentially also be applied to other pathogenic bacteria.

Article adapted by Medical News Today from original press release. Click 'references' tab above for source.
Visit our infectious diseases / bacteria / viruses section for the latest news on this subject.

Mikhail Kudryashev, Marco Stenta, Stefan Schmelz, Marlise Amstutz, Ulrich Wiesand, Daniel Castaño-Díez, Matteo T Degiacomi, Stefan Münnich, Christopher KE Bleck, Julia Kowal, Andreas Diepold, Dirk W Heinz, Matteo Dal Peraro, Guy R Cornelis, Henning Stahlberg. In situ structural analysis of the Yersinia enterocolitica injectisome, eLife, 2013, DOI: 10.7554/elife.00792

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