Showing posts with label outbreaks. Show all posts
Showing posts with label outbreaks. Show all posts

Monday, 19 August 2013

Remote satellite methodology predicts cholera outbreaks months in advance with greater accuracy

Main Category: Tropical Diseases
Also Included In: Public Health
Article Date: 19 Aug 2013 - 0:00 PDT Current ratings for:
Remote satellite methodology predicts cholera outbreaks months in advance with greater accuracy
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In two recently published papers, Tufts University School of Engineering researchers have established new techniques for predicting the severity of seasonal cholera epidemics months before they occur and with a greater degree of accuracy than other methods based on remote satellite imaging. Taken together, findings from these two papers may provide the essential lead time to strengthen intervention efforts before the outbreak of cholera in endemic regions.

Cholera is an acute diarrheal disease caused by the bacterium Vibrio cholerae. It occurs in the spring and fall in the Bengal delta. In past research, scientists have used chlorophyll, a surrogate for phytoplankton, as a measuring stick for cholera. The cholera bacteria lives and thrives among phytoplankton and zooplankton.

In the June issue of Remote Sensing Letters, Antarpreet Jutla, then a doctoral student at Tufts School of Engineering and now on the faculty at West Virginia University, was lead author on a study that measured chlorophyll and other organic matter.

The team, which was led by Shafiqul Islam, Ph.D., professor of civil and environmental engineering at Tufts School of Engineering, used satellite data to measure chlorophyll and algae, organic substances, and flora that also support growth of the cholera bacteria.

Using satellite images, the researchers created a "satellite water marker" (SWM) index to estimate the presence of organic matter including chlorophyll and plankton based on wavelength measurements.

A predominance of green, plankton-rich water - which is measured at 555 nanometers - indicated the degree to which the waters contained chlorophyll, plankton, and other impurities. Clear, blue water - measured at 412 nanometers - indicated low levels of these impurities, according to the researchers.

The researchers targeted the spring epidemic, which is a coastal phenomenon caused by water flow into the delta from three principal rivers - the Brahmaputra, Ganges, and Meghna. Unlike the spring outbreak, the fall epidemic is linked to flooding which follows the monsoons and subsequent breakdown of sanitary conditions rather than coastal conditions.

In their study, the researchers correlated cholera incidence from the International Center for Diarrheal Disease Research, Bangladesh from 1997 to 2010 with satellite imaging data from the National Aeronautics and Space Administration for the same time period.

They discovered a relationship between SWM index measurements taken in early winter - from October to December - and the severity of cholera epidemics in the following spring. "In short, the index for chlorophyll along with readings for other biological matter in early winter indicated severity of cholera incidences in the spring," says Jutla.

The SWM is a more accurate predictor of cholera than the algorithm that measures strictly chlorophyll levels because it also measures a broader range of organic matter, says Islam.

"The probability for error in this index-based estimate is less than 10 percent while the error in using the chlorophyll-based algorithm is about 30 percent," says Islam. To validate their hypothesis that the index can be used in coastal areas outside of the Bengal Delta, the team applied the SWM to coastal waters around Mozambique's capital city, Maputo.

Additional authors on this paper are Abu Syed Golam Faruque, and Rita Colwell of the Center for Bioinformatics and Computational Biology at the University of Maryland, and Anwar Huq of the Maryland Pathogenic Research Institute at the University of Maryland. Another member of the team, Ali Shafqat Akanda, was with the Center for Bioinformatics and Computational Biology at UM and is now on the faculty at the University of Rhode Island. He was a doctoral student at Tufts during the research.

In a separate paper that was published online in the journal Environmental Modeling and Software, ahead of the September 1 print edition, Jutla, Islam, and Akanda showed that air temperature in the Himalayan foothills can also be a factor in predicting spring cholera.

The researchers collected air temperature data during the early winter months (October-December) in the foothills. In seasons of warm temperature, the foothills experienced higher than normal precipitation and early snow melt. This caused higher than normal water flow in the Ganges, Brahmaputra and Meghna Rivers and eventually into the Bay of Bengal during the drought period. Higher river flow into the delta impedes plankton-carrying seawater from moving inland

When correlated with satellite data on chlorophyll levels, the researchers found that air temperatures could lessen the extent of cholera even when chlorophyll levels were high.

Article adapted by Medical News Today from original press release. Click 'references' tab above for source.
Visit our tropical diseases section for the latest news on this subject.

"A Water Marker Monitored by Satellites to Predict Seasonal Endemic Cholera," Antarpreet Jutla, Ali Shafqat Akanda, Anwar Huq, Abu Syed Golam Faruque, Rita Colwell, and Shafiqul Islam, Remote Sensing Letters, published on line before print June 3, 2013, Vol. 4, No. 8, 822.http://dx.doi.org/10.1080/2150704X.2013.802097

The research reported in this paper was supported, in part, from National Institutes of Health (NIH) grants 1RCTW008587-01 and 2R01A1039129-11A2.

"A framework for predicting endemic cholera using satellite derived environmental determinants," Antarpreet S. Jutla, Ali S. Akanda, Shafiqul Islam, Environmental Monitoring and Software, published online before print http://dx.doi.org/10.1016/j.envsoft.2013.05.008

The research reported in this paper was supported through NIH funding under award number 1RCTW008587-01. Dr. Jutla acknowledges the support from Statler College of Engineering and Mineral Resources, West Virginia University, Morgantown, WV.

Tufts University

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Wednesday, 14 August 2013

University of East Anglia research could contain infectious disease outbreaks

Main Category: Bird Flu / Avian Flu
Also Included In: Infectious Diseases / Bacteria / Viruses
Article Date: 14 Aug 2013 - 14:00 PDT Current ratings for:
University of East Anglia research could contain infectious disease outbreaks
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Researchers at the University of East Anglia (UEA) have identified a rapid response which could help halt infectious diseases such as bird flu, swine flu and SARS before they take hold.

Focusing on the avian flu virus strain H5N1, research published in the journal PLOS ONE identifies key stages in the poultry trade chain which lead to its transmission to other birds, animals and humans.

High risk times for the disease to spread include during transportation, slaughter, preparation and consumption. It is hoped that the findings and recommendations will help stop the spread of other infectious diseases.

The H5N1 avian flu strain has been responsible for the deaths of millions of poultry, as well as 375 confirmed human deaths. Areas of Southeast Asia have been hardest hit with more than 2,500 reported outbreaks among domestic poultry in Vietnam alone. The disease has also spread rapidly from Southeast Asia into Europe. However the way that the virus transmits from poultry to humans has been poorly understood.

The UEA research team adopted a system widely used in the food production industry, known as Hazard Analysis of Critical Control Points (HACCP), and investigated whether it could be used as a rapid response to emerging outbreaks.

They investigated Vietnam's poultry trade system and identified four key stages within the poultry trade chain which pose high risks for the transmission of HPAI viruses in human and poultry populations:

Contact within poultry flocks which act as viral 'mixing pots'. Examples include at markets which act as huge reservoirs for the virus, at bird vaccination centres, and at cock fighting contests.Transportation and sale of poultry and eggs.Purchase and slaughter of poultry from markets.Preparation of poultry for consumption - particularly in unhygienic conditions and when meat is raw or undercooked.Preventative measures outlined in the report include isolating and quarantining flocks, using protective equipment such as masks, gloves and sterile utensils when slaughtering and preparing carcases for consumption, and using social media to promote good hygiene standards.

The research was led by Dr Diana Bell and Dr Kelly Edmunds from UEA's school of Biological Sciences.

Dr Bell said: "Since 1980 an average of one new infectious disease emerges in humans every eight months - representing a substantial global threat to human health.

"Diseases which originate in birds and mammals such as SARS and bird flu represent 60 per cent of outbreaks. As well as representing a significant global health threat, they also create a burden to public health systems and the global economy.

"We identified poultry transportation, slaughter, preparation and consumption as critical control points in response to HPAI H5N1 outbreaks in Vietnam."

Dr Edmunds added: "We also showed that adopting the Hazard Analysis of Critical Control Points (HACCP) system, which is already used in the food production industry, could work very effectively as a precursor to more time-consuming quantitative data collection and biomedical testing."

The research was conducted as part of a three year interdisciplinary study of the impact of H5N1 on mechanisms of transmission, local livelihoods and food security. It was funded by the Economic and Social Research Council (ESRC) and the Natural Environment Research Council (NERC).

Article adapted by Medical News Today from original press release. Click 'references' tab above for source.
Visit our bird flu / avian flu section for the latest news on this subject.

PLOS ONE - 'Hazard Analysis of Critical Control Points Assessment as a Tool to Respond to Emerging Infectious Disease Outbreaks'

Kelly L. Edmunds, Paul R. Hunter, Roger Few and Diana J.Bell

University of East Anglia

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All opinions are moderated before being included (to stop spam). We reserve the right to amend opinions where we deem necessary.

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Note: Any medical information published on this website is not intended as a substitute for informed medical advice and you should not take any action before consulting with a health care professional. For more information, please read our terms and conditions.



View the original article here